PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G124800.1
Common NamePHAVU_005G124800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 309aa    MW: 35166.8 Da    PI: 7.9633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G124800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05145164120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Phvul.005G124800.1 145 FACSICSKTFNRYNNMQMHM 164
                         78*****************9 PP

2zf-C2H214.40.00011229251123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +C+ksF  k + ++H +++
  Phvul.005G124800.1 229 FMCRKCSKSFAVKGDWRTHEKNC 251
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-6114168No hitNo description
SMARTSM003550.17145167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5145164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45145172IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
SMARTSM00355190192224IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.72E-6215249No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5215249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556229249IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSFRECNVEN KNLCLQTPTF IEWLEPSSSL TGSISPPPSS LSHQHDQLSQ ETIQFLPFKE  60
DHGVKRDGLE VKEEKVEQVT VALHIGLPHT GDPDPDEHDG SDEKKVFHVK EEEPLKKSFQ  120
GCSFNQERRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM QMHMWGHGSE FRKGPDSLKG  180
TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFM CRKCSKSFAV  240
KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSHEGFV EDEKECVTGS  300
DEDEVAHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150080.10.0hypothetical protein PHAVU_005G124800g
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLV7BVS60.0V7BVS6_PHAVU; Uncharacterized protein
STRINGGLYMA12G30930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-114WIP domain protein 3